rs227784765 SNP Detail

Summary

• ID
  rs227784765
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:80307901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGCCCCT CGGGACCAGG
  CTGATCCCTG TCCTTCTAGA GCCAGATTTG TGGCTAGCTG GCATTTCTCA GCCCACTGAG
  TTTCCCGCCT CGCCAAGGAT CCTTGGGTAC TTCTCTAGGG TTCCGTGCAC TGGCCCGCTG
  CGGACTTCTT GTGTGGCAGC TTGGCTGTCC GGCTTCCCAG GTTCCTTGGC AGGTATTCCC
  Y
  GGTGGACTAA CACAGCTGAA GCTACCTTCT GGAGACTAGT TTCCTCCTTC CCCACTTTTA
  CAGCTTCCCT ACCTACACTT TGCTGAAACT AGGAAGAGCC CTAAAATGGT CTACCTGTAT
  CATAAACCTA GCAGATGCAT ACACCTAATA GATGGAGAAA CTGAGACTCA AAGAGCAGAG
  CTAGACAAGA GACTTAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386629953	MGP_WTSI_12_81362114	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	T	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227784765					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	T	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386629953	MGP_WTSI_12_81362114	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:80307901 () rs orientation: forward

Symbol	Name	Function Class
Actn1	actinin, alpha 1	756 bp upstream
Cpgi4813	CpG island 4813	75 bp distal
Gm47766	predicted gene, 47766	within coordinates
Rr468867	regulatory region 468867	1047 bp distal
Rr468868	regulatory region 468868	1359 bp distal
Rr468869	regulatory region 468869	266 bp distal
Tssr116876	transcription start site region 116876	918 bp upstream
Tssr116877	transcription start site region 116877	802 bp upstream
Tssr116878	transcription start site region 116878	775 bp upstream
Tssr116879	transcription start site region 116879	756 bp upstream
Tssr116880	transcription start site region 116880	727 bp upstream
Tssr116881	transcription start site region 116881	622 bp upstream
Tssr116882	transcription start site region 116882	584 bp upstream