rs227785054 SNP Detail

Summary

• ID
  rs227785054
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165481061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCAAAACA TGCATACACA TAAAATGAAA TAAATAAATC
  TAAACAAACA TCAAAAACCC CAGGAGAATG ATGCAGTGGA ATTATGGGAG AGAATAACTG
  K
  GGGGTGGGAG CAGATTCCTT TGCCTGAGAT GTCACAAGGC AGGCTTTAGG GAAGAGGTCG
  CTGTCACCTG AGACCTGAAG GATAGGCTGG ATGGAAGTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320087006	CHEV_1_167583623	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227785054					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165481061 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr422410	regulatory region 422410	54 bp proximal
Rr422411	regulatory region 422411	304 bp proximal
Rr422412	regulatory region 422412	1896 bp proximal
Tssr9810	transcription start site region 9810	387 bp upstream
Tssr9811	transcription start site region 9811	1778 bp upstream
Tssr14774	transcription start site region 14774	902 bp upstream