rs227795603 SNP Detail

Summary

• ID
  rs227795603
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92491101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGCCGGCC AGTCCTCGCC
  ATTCACCACG ATAGAAGTTT CTGGCTCGGG TTCCGGCTAC CGACTGGAAG CACCAAGACC
  TCAAATCTAT TACCGCTGGT CGGGTAAAAA AGTCAACTAA AACAAGGACC AGAAGAAGCC
  GCCACCTTAA GCCTTCCCTG GCCCCGCCCC TTAGCCCTAC CCACCATTAA TAAGCTCTCC
  R
  TAAGGCCTCC GCTTCCGGCC ACGACGGCTA CGCACCCGCC CCACCCTGAC CCCGCCCCTA
  GCGGTCCGGC CCCACCCCGC CCTCTAGCTC CGCCCCGTCC CAGACAGAAC CCGCCCGGGA
  CGGCCTTCGC CTAGGTGGAC GCTAGGGGCG CCGCGGAGCC GTACTTTACC TTCTCTGCTG
  GCTCCGTGGA GGACGCGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389492700	MGP_WTSI_13_93124548	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227795603					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389492700	MGP_WTSI_13_93124548	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92491101 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	within coordinates
Dhfr	dihydrofolate reductase	190 bp upstream
Gm19308	predicted gene, 19308	1757 bp downstream
Msh3	mutS homolog 3	within coordinates
Rr403896	regulatory region 403896	within coordinates
Rr483661	regulatory region 483661	within coordinates
Rr483662	regulatory region 483662	55 bp distal
Rr483663	regulatory region 483663	74 bp proximal
Rr483664	regulatory region 483664	382 bp proximal
Tssr120622	transcription start site region 120622	155 bp upstream
Tssr120623	transcription start site region 120623	546 bp upstream
Tssr120624	transcription start site region 120624	593 bp upstream
Tssr120625	transcription start site region 120625	619 bp upstream
Tssr120626	transcription start site region 120626	646 bp upstream
Tssr123429	transcription start site region 123429	73 bp upstream
Tssr123430	transcription start site region 123430	350 bp downstream