rs227797679 SNP Detail

Summary

• ID
  rs227797679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8615371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGGTGT CAGATCTCGT
  TACGGATGGT TGTGAGCCAC CATGTGTTTG CTGGGATTTG AACTCCGGAC CTTTGGAAGA
  GCAGTCGGGT ACTCTTACCT ACTGAGCCAT CTCACCAGCC CCATGTTCTT TATAAGATAT
  GTGATTTTAA AATTGTTTCC TAGTCTGTGT TCTTGTTTAC TTTCTCAATG GTGTCTACTG
  R
  AGGATCAAGT TATAAATATT GATGTCCAAT TTATCTATTT TTCTTTTGAT TATTGTACAT
  AGGATATCAT GTCAAGGAAA TACCAAAGAG CTAAACTTAT GTTTTCTTTC AATAATTTTG
  TATTTAAATC AGATCTACTT GGAGTTTTTG TTAAGTCATG AAGTAGGACA ATTCAAAAGC
  GAGTTTTATT AATTTTTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321463522	CHEV_5_8565371	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227797679					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8615371 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	1682 bp upstream
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	1722 bp upstream
Tssr45119	transcription start site region 45119	1742 bp upstream