rs227800927 SNP Detail

Summary

• ID
  rs227800927
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67854761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATAAGCTC ACATCAGAGT
  ACAATACCTG GTACAGTTAC ATATATGCAT CACCGTTTTC AAATTCAAGT TTAATAACAC
  AACTGTTACT ATGAGTTCTA ATTTTGCATT CAACTTCTCA ACTTTTTTTT TTTTTTTTTT
  TTTTTTTTTT TTTTTTTTTT TTTGCTTTGG CCATCCTAGA ACTCAGTACT CAGTATGTAG
  T
  TTAGGTTGGC CTAGCATATG ATTAATTTCA TGTGAACTCT AAACTCTGAC CTCAAAGTCT
  AGTCCCCGCC CCCGCCTCCT CCCCCTTCCT GGATCTTCAC TCTCCATTTC TCAGCCCCCC
  CCCTTTTCTG GCCATTTGCA ATGATCTGCA CCCCAATCCT TAGCCTCTGG TTAAAGACTA
  TTTAAATTCA AAAAGAGTCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323722452	CHEV_11_67777437	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227800927					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67854761 () rs orientation: forward

Symbol	Name	Function Class
Cfap52	cilia and flagella associated protein 52	within coordinates
Cpgi3072	CpG island 3072	1499 bp proximal
Rr449567	regulatory region 449567	830 bp distal
Rr449568	regulatory region 449568	360 bp proximal
Rr449569	regulatory region 449569	1697 bp proximal
Tssr108559	transcription start site region 108559	1671 bp downstream
Tssr108560	transcription start site region 108560	1696 bp downstream