rs227803049 SNP Detail

Summary

• ID
  rs227803049
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133864216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCCTTCG CCACTTTCTG
  GGCTGAGGCT TCCTGGCAGA ACCTCCGCTC CACTCAGCTC CACTCAGCTC CACTCAGCCC
  CGCCCAGCCC GCCCGCCTCG CCCCGCCCCG CCCCGCCCCG CCCCGCCTAT GACGCTTCAC
  ATCCCTAGCC CGGGACTTTC TGGAAGCCAC CAGCCACGTG TGTGTGTGGA GGGGAAATAC
  G
  TCTCCTGCGC ATGCGCCGTT AGGCCTCTCT CGTGTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCCCCCCCCC TCCTCCGCCA GAGTCAGACC CGCCGCCCCC GCCCCCGCTC
  CCGCCGCGGA GCGGCTCGGG GCAGCATCAC TTTGCATCCT CACCAAGGCA TTCTTATAGT
  CAACAACTCC CCTACCAAGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404657357	MGP_WTSI_X_131498006	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227803049					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404657357	MGP_WTSI_X_131498006	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133864216 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22945	CpG island 22945	230 bp proximal
Nxf2	nuclear RNA export factor 2	within coordinates
Rr693643	regulatory region 693643	within coordinates
Rr693644	regulatory region 693644	419 bp proximal
Tssr164159	transcription start site region 164159	1228 bp downstream
Tssr164160	transcription start site region 164160	1275 bp downstream