rs227813289 SNP Detail

Summary

• ID
  rs227813289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54799134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAACACT TTGGGGCCAA
  GCAGACCCAG GCCACTTGGC TGGCACCTGC AGGAGAGTTC CTGGGCTGGG TGATGGCGCT
  GCCTCTAATT CCAGGGGTCC CAAGGGAACT GGCGAGCTGG CCAGGGCCTC CCCTGGGCTC
  CTGAATTCCC AGATGAGAGG GATGTGAATA CTGCCCTCCA ATCACCCGAA GAAAGTCCTC
  R
  GCCACCTGCC CAGGGGCTAA GAGACCCAGG CAGCAGGTGT GACTACCCAT ATACAGAAGC
  ATACTCCTGA CTTCTCTCCC AAACCGCCAC TGCCCCCAGA CTGGAGGCTC AGCCTTGCCA
  CTGACTCTGT CACCCCGGGA AAGTCCTCCC TTCTTGGGCC TCACAGGTTC CAGCAGTCTG
  GAGGGTGTTG AGGCAGGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428884	MGP_WTSI_11_54721810	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227813289					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428884	MGP_WTSI_11_54721810	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54799134 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Rr447428	regulatory region 447428	1985 bp distal
Rr447429	regulatory region 447429	1402 bp distal
Tssr3502	transcription start site region 3502	1333 bp downstream
Tssr3503	transcription start site region 3503	1807 bp upstream
Tssr101552	transcription start site region 101552	1980 bp downstream
Tssr101553	transcription start site region 101553	1527 bp downstream
Tssr101554	transcription start site region 101554	1515 bp downstream
Tssr101555	transcription start site region 101555	1473 bp downstream
Tssr101556	transcription start site region 101556	1178 bp downstream
Tssr101557	transcription start site region 101557	1148 bp downstream
Tssr101558	transcription start site region 101558	1131 bp downstream
Tssr101559	transcription start site region 101559	1108 bp downstream
Tssr101560	transcription start site region 101560	1062 bp downstream
Tssr101561	transcription start site region 101561	227 bp upstream
Tssr101562	transcription start site region 101562	251 bp upstream
Tssr101563	transcription start site region 101563	301 bp upstream
Tssr101564	transcription start site region 101564	315 bp upstream
Tssr101565	transcription start site region 101565	744 bp upstream
Tssr101566	transcription start site region 101566	794 bp upstream
Tssr101567	transcription start site region 101567	1155 bp upstream
Tssr101568	transcription start site region 101568	1231 bp upstream
Tssr101569	transcription start site region 101569	1314 bp upstream
Tssr101570	transcription start site region 101570	1336 bp upstream
Tssr101571	transcription start site region 101571	1390 bp upstream
Tssr101572	transcription start site region 101572	1485 bp upstream
Tssr101573	transcription start site region 101573	1522 bp upstream
Tssr101574	transcription start site region 101574	1536 bp upstream
Tssr101575	transcription start site region 101575	1584 bp upstream
Tssr101576	transcription start site region 101576	1598 bp upstream
Tssr101577	transcription start site region 101577	1627 bp upstream
Tssr101578	transcription start site region 101578	1710 bp upstream
Tssr108006	transcription start site region 108006	1023 bp upstream
Tssr108007	transcription start site region 108007	256 bp downstream
Tssr108008	transcription start site region 108008	316 bp downstream
Tssr108009	transcription start site region 108009	332 bp downstream
Tssr108010	transcription start site region 108010	753 bp downstream
Tssr108011	transcription start site region 108011	1349 bp downstream
Tssr108012	transcription start site region 108012	1383 bp downstream
Tssr108013	transcription start site region 108013	1477 bp downstream
Tssr108014	transcription start site region 108014	1484 bp downstream
Tssr108015	transcription start site region 108015	1567 bp downstream
Tssr108016	transcription start site region 108016	1619 bp downstream
Tssr108017	transcription start site region 108017	1670 bp downstream
Tssr108018	transcription start site region 108018	1685 bp downstream
Tssr108019	transcription start site region 108019	1721 bp downstream
Tssr108020	transcription start site region 108020	1777 bp downstream
Tssr108021	transcription start site region 108021	1797 bp downstream
Tssr108022	transcription start site region 108022	1808 bp downstream