rs227822829 SNP Detail

Summary

• ID
  rs227822829
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40692720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAT TCACTTATTG TGAAACTATC
  C
  TTGTCCTGGC TTGCTTTTTG TTGCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322919577	CHEV_9_40589507	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227822829					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40692720 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21601	CpG island 21601	827 bp proximal
Gm16096	predicted gene 16096	within coordinates
Rr676920	regulatory region 676920	1964 bp proximal
Tssr84467	transcription start site region 84467	1059 bp downstream
Tssr84468	transcription start site region 84468	334 bp downstream
Tssr84469	transcription start site region 84469	247 bp downstream
Tssr84470	transcription start site region 84470	853 bp upstream
Tssr84471	transcription start site region 84471	980 bp upstream
Tssr88968	transcription start site region 88968	1631 bp downstream