rs227824573 SNP Detail

Summary

• ID
  rs227824573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107180992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACTGATA TCTGCAGCAA
  TCTCTTGGAT ATGAGACTGA TGGCTGCAGC AATCTCTTGG ATATGAGACT GATATCTGCA
  GCAATCTCTT GGATATGAGA CTGATGGCTG CAGCAATCTC TTGGATATGA GACTGATGGC
  TGCAGCAATC TCTTGGCACT GTGATTTTCT CCTGTGCATC ATCTGGATTA TAATCAACCT
  R
  AGGAGACAAA CAGATTTTCT TATTCAAATT GACTTTCATA ACACACCAAC CTCTCTTACA
  CAAGGTAACC CATGCTATCC TCCCCACACC TGGATGAACC AGAATACAGT ACCCCTATAT
  CAAAGGCTCC CCAGACACTC AGAGATCCCA TGGGAGGCTG GTGCCCTGGC TACCAGGATT
  CAAATGTATG CCTCTGACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320865149	CHEV_3_107076594	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227824573					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107180992 () rs orientation: forward

Symbol	Name	Function Class
Rr582951	regulatory region 582951	93 bp proximal
Rr582952	regulatory region 582952	347 bp proximal