rs227836725 SNP Detail

Summary

• ID
  rs227836725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128512528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACCTGCA AGGTCCGGGA
  GCACCGTCAA AGGGCCACTG TGGAAGCCGG GAAGTGAGGA GGCCGACTTG GAGATACTTA
  GCACTGAGGC TTCGAGGGAG GGGAAATGAC ACCAGGGCAA CGTAGGGGGA TGGGGGGGTC
  TCACTTCCTG TTAGGAGAAA GCAAACAGAG TTTCTTTTCT TGTTGTTGCT TTCTTTTTTA
  Y
  GTGCAGCCCA GGCTGTCCCA CGAGCTCAGT TTGTTAAGAC TCCTTTTGAA CTTCTGATTC
  TCTTACTTCC ACCCCCAGGG CTGGGATGAT GGCTGCGCAC CACTAGAACA GTCTGCAGTG
  TGGTTAGACC CCTGGCTTCT GTGCCTGCTA CATCCTCACC CCCAACCCCC CTCCACACAC
  ACACACACAC ACACACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321305841	CHEV_4_128295979	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227836725					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128512528 () rs orientation: forward

Symbol	Name	Function Class
Rr599982	regulatory region 599982	within coordinates
Rr599983	regulatory region 599983	256 bp proximal
Tlr12	toll-like receptor 12	116 bp upstream
Tssr43437	transcription start site region 43437	408 bp upstream
Tssr43438	transcription start site region 43438	138 bp upstream
Tssr43439	transcription start site region 43439	110 bp upstream
Tssr43440	transcription start site region 43440	89 bp upstream