rs227841844 SNP Detail

Summary

• ID
  rs227841844
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29781184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGCCTC ATCCTCAGGC
  GGCTCCCCCA GGTACAGCCA ATGTGGGGGG CGCCTTTGCA GTAGGGCAGG GAAAGGTGGT
  CAGGGCTCCC CAGGCCAGGC TCAATGGAAA CTTTTTTTTA GTTTCCCAGG TACTGAAAGT
  CTGGACCCAA AACACTTGAA AGTGACTTTG AAAGGGGAGG AGTAAAGACT CCCCTCCCCC
  R
  CCTACAGCTT ACTAGTAGCA AACAAGATCA CTCTTAATGC TTTGAGTTCA GCTTGGCTTC
  AGACTCACTA GGTAGTCAAG GTTGTGCTTG AATTCCCGAT TCTCCTTTCT CCACGTCCCA
  TGTGGTGGCT TAAAAGCGTT TCCCACCATG GCACCTCTAA ACTAGTGTTA AAGTGAGCAG
  AGATATTATA AGTAAGTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353505618	MGP_WTSI_2_29746692	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227841844					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353505618	MGP_WTSI_2_29746692	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29781184 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11418	CpG island 11418	240 bp distal
Gm75149	predicted gene, 75149	358 bp upstream
Odf2	outer dense fiber of sperm tails 2	within coordinates
Rr396853	regulatory region 396853	1296 bp downstream
Rr554173	regulatory region 554173	622 bp distal
Rr554174	regulatory region 554174	within coordinates
Rr554175	regulatory region 554175	462 bp distal
Tssr452	transcription start site region 452	1456 bp downstream
Tssr453	transcription start site region 453	1179 bp downstream
Tssr454	transcription start site region 454	1156 bp downstream
Tssr455	transcription start site region 455	1127 bp downstream
Tssr456	transcription start site region 456	1058 bp downstream
Tssr17034	transcription start site region 17034	1966 bp downstream
Tssr17035	transcription start site region 17035	1929 bp downstream
Tssr17036	transcription start site region 17036	1419 bp downstream
Tssr17037	transcription start site region 17037	1336 bp downstream
Tssr17038	transcription start site region 17038	1091 bp downstream
Tssr17039	transcription start site region 17039	1065 bp downstream
Tssr17040	transcription start site region 17040	661 bp downstream
Tssr17041	transcription start site region 17041	641 bp downstream
Tssr17042	transcription start site region 17042	627 bp downstream
Tssr17043	transcription start site region 17043	616 bp downstream
Tssr17044	transcription start site region 17044	462 bp downstream
Tssr17045	transcription start site region 17045	304 bp downstream
Tssr17046	transcription start site region 17046	813 bp upstream
Tssr17047	transcription start site region 17047	1882 bp upstream
Tssr23341	transcription start site region 23341	802 bp upstream