rs227843287 SNP Detail

Summary

• ID
  rs227843287
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98946250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAATAGA AGGTGGGCAT
  GGCAGTGTAT GCATGTAATT TTCTTGAACT ATATAGCATG GCTCTCTCTC TCTCTCTCTC
  TCTTTCTCTC TCTCTCTCTC TCTCAAAGGT TTTACCCTTG CCTGGCCTCA GTGGGAGAGG
  AAGTACCTAG CTTTGTAGAG ACTTGAAGTT GGGGGTGGGG GTTGGTGGGG GGTGGGGTGG
  C
  ACTCAGCTCA GCGGAGAAAG GGGGGGGGGA GGGAGGAAGG ATTGTGGGAA GGAGTAACCA
  GGAGGGAGGT AGTGATCAGG ATGTAAAGTG AATAAGTACA AAATAAAATT GCATTAAACA
  CAAAAAGAAA AGAAGAAAAG GTTTCACTAT GTAACTGTGT ATCCTTGGCT GGCCCAGAAT
  TCCAAAAGGT GCAATGTAGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
ss395148551	MGP_WTSI_15_98878800	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
rs227843287					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395148551	MGP_WTSI_15_98878800	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98946250 () rs orientation: forward

Symbol	Name	Function Class
D15Jcs28	DNA segment, Chr 15, John C. Schimenti 28	250 bp distal
Gm41399	predicted gene, 41399	within coordinates
Rr305848	regulatory region 305848	951 bp proximal
Rr311358	regulatory region 311358	1017 bp distal
Rr315589	regulatory region 315589	951 bp proximal