rs227847977 SNP Detail

Summary

• ID
  rs227847977
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:42311610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATTCCTG TATCCTTCCC
  CTTTCTTCTC AAAGCCATTC CGATTCTTTC ATATTCACAG TCCACTCCCC ACCCCCACCC
  CCCCTCGCTC AAAATCCAAC GTTTGCTCAG CACTCCTCCC ATTGGTTTTT TTTCTCCTCC
  TCGGACTCTG GTTCCCACTG CTCCCCTCCC CACCCCTAGC GCTCCCACCC CACCCCCACC
  T
  CCTCCGCTTG TCCCAGGCAG GGGATTGCTA TTCTTAAGGA AATAAAGTTC AACTCCTTGC
  CCCTTTCAAC TGGCTTAGAC CGGGAGGAGA AGGGTTTCAG GAACCAATCT TCCTCCCTAC
  ACCCTACTCC TATTTTTCTT TTTAATATTT AAGGGGACAC ACACACACAC TCTCTCTCTC
  TCTCTCTCTC TCCCTCTCTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J
ss383143987	MGP_WTSI_11_42234285	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J
rs227847977					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383143987	MGP_WTSI_11_42234285	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42311610 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2743	CpG island 2743	1930 bp distal
Cpgi2744	CpG island 2744	280 bp distal
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2	within coordinates
Gm34591	predicted gene, 34591	within coordinates
Rr445405	regulatory region 445405	1016 bp distal
Rr445406	regulatory region 445406	77 bp proximal
Tssr100974	transcription start site region 100974	1064 bp downstream
Tssr100975	transcription start site region 100975	998 bp downstream
Tssr100976	transcription start site region 100976	828 bp downstream
Tssr100977	transcription start site region 100977	340 bp downstream
Tssr100978	transcription start site region 100978	4 bp downstream
Tssr100979	transcription start site region 100979	46 bp upstream
Tssr100980	transcription start site region 100980	450 bp upstream
Tssr100981	transcription start site region 100981	475 bp upstream
Tssr100982	transcription start site region 100982	502 bp upstream
Tssr100983	transcription start site region 100983	539 bp upstream