rs227848441 SNP Detail

Summary

• ID
  rs227848441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8616975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAATCTGA GCTTGTACTC
  TATCACTTCA GAGTTCTGCT GTCTCCAGTT AACACCCAAA TTCCTTAATC ACAAAACATT
  CCTAGGTTTT ATTCTTTTTT TTTTCAGTTG TTCCTCAAGA CACTTTTCAC TTCAGCACAA
  AGTTCACATG AAACTCTTTA ATACTTTGAA GGCAGTTATG TACTCCAAGA ATTTGTACTT
  Y
  AGTTCCCCAC CCTTCCTCCA CCCTTCCTCC ATCCTTGGAT ATTCACAGAT TACTGCTTCA
  AAGTTGCCTG CCTTAGCTCC TCCCCTTGAG CTGGGGTAAA CATGCTGTCA CTATTTTAAA
  GACTATCATT TCTCTTTGTC CGCGGAGTCA GACAGAACAA GAAGAAATCC ACTTGATTCA
  GGTACTCTCA AGATTCTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321463542	CHEV_5_8566975	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227848441					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8616975 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	78 bp upstream
Rr130297	regulatory region 130297	426 bp proximal
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	118 bp upstream
Tssr45119	transcription start site region 45119	138 bp upstream