rs227849094 SNP Detail

Summary

• ID
  rs227849094
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177148658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACACTGT ATGGAATGAG
  GGCATGCGTG GTGCAAAGTG CCCTTGTTCC GTATTTATAA CCAAGGCTGC AGGGATGTCA
  TATGATACTC AGTGAGCAAC TGCTTCAGGA AATGCTTTGA CTTTGTTATG GTTTGGTTTT
  TAATTCATTT TTGGTCATTC TGGGTTCAGA AACCCTTCTA CTGTTGCCAA TTACATGGAC
  M
  CCCCCCCCCC CCCACACACA CACACACAGG TGAATATGAA ACCCTGTATG TGATCATGCC
  TACACATGAA GTGGGGAAAG GCACTTGATG GGTAAGTCTG GCAACCTGAG TGTGATCCCT
  GGCATCCACA TAAGAGTAGA AAGAAAGAAC CAAATCCACA AAGCTGTCCC TTGACCTCCA
  CATGACACCA TGACACCCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss352520007	MGP_WTSI_1_179251223	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs227849094					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352520007	MGP_WTSI_1_179251223	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177148658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1079	CpG island 1079	1636 bp proximal
Gm36904	predicted gene, 36904	within coordinates
Rr423981	regulatory region 423981	1159 bp proximal
Rr423982	regulatory region 423982	1660 bp proximal