rs227851193 SNP Detail

Summary

• ID
  rs227851193
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43628181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGGTGG GGGTGGAGCA
  GTGCACTGGA GGCAGGAGGC ATAAGCACAG AGGAGGCAGG GCTGGGGAGA GCAAAGGAGG
  ATGGCACACC AAAACAAAGA CTGTAGGAAG AAACCACTTT GAAACTTACT ACTTTGTAAG
  TAGTGAGGAG AAAAAGCCCC CAGAGCTAGG AGAAAGATTC TGTCACAGAG CTGTTGGTCA
  S
  GGAGACTCCA GAGGCCCCCA AAGCAACATA ATCAGCCCTT TAAGTTGCCT ACCAAAACCC
  AGGTTTTGTT TGATATTTAG TCTAAGGATC TATTCCTTGT GGGGTTTTTG TTTGGTTGGT
  TTGGTTTGCT TTGGGTTTGT GTGTGTGTGT GTATGTGTGT GTGTGTGTGT TTGGGATTTT
  TAGTTGTTTG CTTTTGTTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320269118	CHEV_2_43593689	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227851193					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43628181 () rs orientation: forward

Symbol	Name	Function Class
Rr556296	regulatory region 556296	within coordinates
Rr556297	regulatory region 556297	212 bp proximal
Tssr17595	transcription start site region 17595	1355 bp upstream
Tssr23873	transcription start site region 23873	506 bp downstream
Tssr23874	transcription start site region 23874	847 bp downstream