rs227852988 SNP Detail

Summary

• ID
  rs227852988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8616768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATTTGAA TGAATATATT
  TATCACCAAA ATATTTTCAA TATTGTTTCA AATGTCACAT GTATAAAATT TGGCTTAATG
  TTTCTAATTA ATCCTTAGTC TGTGGATGGA CAGAAATTAA ACTTTGAACA AACCAACTCA
  GTTTTAAATT CACTTTTCAT TTAAGATTTT CCTCAGAATG CTATCAAAGT AATTTTGCAC
  Y
  TTAAAACAAA ATCTGAGCTT GTACTCTATC ACTTCAGAGT TCTGCTGTCT CCAGTTAACA
  CCCAAATTCC TTAATCACAA AACATTCCTA GGTTTTATTC TTTTTTTTTT CAGTTGTTCC
  TCAAGACACT TTTCACTTCA GCACAAAGTT CACATGAAAC TCTTTAATAC TTTGAAGGCA
  GTTATGTACT CCAAGAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321463539	CHEV_5_8566768	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227852988					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8616768 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	285 bp upstream
Rr130297	regulatory region 130297	633 bp proximal
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	325 bp upstream
Tssr45119	transcription start site region 45119	345 bp upstream