rs227865866 SNP Detail

Summary

• ID
  rs227865866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15076730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGTGAT CAGACACGTG
  GCCACCAGAC TAGGGTGCTA ACTGCAACTG GCGGAGGGCC TGGGTTTTAA AAGCGTTTCA
  CTCAACAATG AAACTCAAAT CTTCCCTCTT TCCTTCTGCA GACAGGAGCA AGAATGTGGA
  GAGTGATGTG GGAAACCTGA CGTGGAAGGA AGCAGCAGAG GCTCCAGATG ACAAATGAGG
  R
  AAACCTGGGC ACACACAGTA ACTGCCTTTC CAGACACTCG CCCATAGGTG GAGTGGTTTC
  CTAGGTGATC CGTGTGGGCT TGAAGCTGCC ACCCTGATTC AGACAGCCTC AGCTGAATTC
  TGGGCTGCAT AACTGGAGTC TGTAGAACAG AGCTGAAGCT AAGGATTTAA ATGTGGTCAC
  CGTCCCTGGA GGATTTGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373787472	MGP_WTSI_8_15026730	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227865866					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373787472	MGP_WTSI_8_15026730	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15076730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20129	CpG island 20129	518 bp proximal
Gm37844	predicted gene, 37844	within coordinates
Kbtbd11	kelch repeat and BTB (POZ) domain containing 11	within coordinates
Rr660168	regulatory region 660168	399 bp distal
Rr660169	regulatory region 660169	674 bp proximal
Rr660170	regulatory region 660170	1445 bp proximal
Tssr76486	transcription start site region 76486	437 bp upstream
Tssr76487	transcription start site region 76487	456 bp upstream
Tssr76488	transcription start site region 76488	569 bp upstream
Tssr76489	transcription start site region 76489	652 bp upstream
Tssr76490	transcription start site region 76490	1029 bp upstream
Tssr76491	transcription start site region 76491	1228 bp upstream
Tssr80488	transcription start site region 80488	890 bp downstream