rs227866204 SNP Detail

Summary

• ID
  rs227866204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93320272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCTAGTA AGTTTTCATG
  ACTCACCATG AGAAAACTTG CTCTATACAT TGTACTACCG GTAGCACAAG TCTGAAAGGA
  CGTCCTCAGT TGAAGGTGGC AGGGGAGTGA ATGGACAGTG CAGCCGCTAC TCAAAGCAGA
  GATAGAGGCC TGATAGCCAG CCTCTGGTCC ACTTCCTTGC TGACAGTGTA ACTCAGTTGC
  Y
  TCTAAGGAGT TGTCCTCCCT GTCCCCTCAC TGTGACCAGT TCCATCTGCT ATGACTCTTG
  GGTCCTTCAG TTACCTCACC TCACCCCATG AGGATTAACT CAGAAGCCAG GACATGTTGC
  CTGCTGTGTA AGAACTGAGA GGGGTGCATC ATTTGTCCTG TCATCTTTTC CCTGACGCTC
  CTGTCACCTG CTTGGCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365902338	MGP_WTSI_5_93601439	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227866204					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365902338	MGP_WTSI_5_93601439	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93320272 () rs orientation: forward

Symbol	Name	Function Class
Rr114906	regulatory region 114906	1672 bp distal
Rr130579	regulatory region 130579	within coordinates
Septin11	septin 11	within coordinates
Tssr47366	transcription start site region 47366	1027 bp downstream
Tssr47367	transcription start site region 47367	59 bp upstream
Tssr47368	transcription start site region 47368	351 bp upstream
Tssr47369	transcription start site region 47369	379 bp upstream
Tssr47370	transcription start site region 47370	522 bp upstream
Tssr47371	transcription start site region 47371	581 bp upstream
Tssr47372	transcription start site region 47372	614 bp upstream
Tssr47373	transcription start site region 47373	649 bp upstream
Tssr47374	transcription start site region 47374	1171 bp upstream
Tssr47375	transcription start site region 47375	1264 bp upstream