GGACAGATCA TTCCGCCGGG AGCAAGAGCT CAGACGGGAC AGAAAATTCC
R
TGAGGAAGAA GAGCGCCGCG AGGAACTGGA GGAAGAGCAG CGTGGCCAAG
R = A/G
Note: Sequence in lower case indicates low-complexity or repetitive sequence |
| Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ss358876340 | MGP_WTSI_3_93250052 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A | A | A | A | G | G | A | A | A | A | A | G | G | G | A | A | A | A | A | G | A | A | A |
| SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
||||
| rs227867603 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A | A | A | A | G | G | A | A | A | A | A | G | G | G | A | A | A | A | A | G | A | A | A | ||||
| Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
|---|---|---|---|---|---|---|
| ss358876340 | MGP_WTSI_3_93250052 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
| Location: Chr3:93353437 () rs orientation: forward | ||||||||
| Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
|---|---|---|---|---|---|---|---|---|
| Cpgi13475 | CpG island 13475 | within coordinates | ||||||
| Gm37245 | predicted gene, 37245 | within coordinates | ||||||
| Gm56800 | predicted gene, 56800 | 1336 bp upstream | ||||||
| Gm66249 | predicted gene, 66249 | within coordinates | ||||||
| Tchh | trichohyalin | within coordinates | ||||||
| Tssr962 | transcription start site region 962 | 1004 bp downstream | ||||||
| Tssr963 | transcription start site region 963 | 968 bp downstream | ||||||
| Tssr964 | transcription start site region 964 | 869 bp downstream | ||||||
| Tssr30361 | transcription start site region 30361 | 1846 bp downstream | ||||||
| Tssr30362 | transcription start site region 30362 | 1830 bp downstream | ||||||
| Tssr30363 | transcription start site region 30363 | 1688 bp downstream | ||||||
| Tssr30364 | transcription start site region 30364 | 1616 bp downstream | ||||||
| Tssr30365 | transcription start site region 30365 | 1581 bp downstream | ||||||
| Tssr30366 | transcription start site region 30366 | 1528 bp downstream | ||||||
| Tssr30367 | transcription start site region 30367 | 1489 bp downstream | ||||||
| Tssr30368 | transcription start site region 30368 | 1465 bp downstream | ||||||
| Tssr30369 | transcription start site region 30369 | 1461 bp downstream | ||||||
| Tssr30370 | transcription start site region 30370 | 1452 bp downstream | ||||||
| Tssr30371 | transcription start site region 30371 | 1425 bp downstream | ||||||
| Tssr30372 | transcription start site region 30372 | 1415 bp downstream | ||||||
| Tssr30373 | transcription start site region 30373 | 1362 bp downstream | ||||||
| Tssr30374 | transcription start site region 30374 | 1348 bp downstream | ||||||
| Tssr30375 | transcription start site region 30375 | 1335 bp downstream | ||||||
| Tssr30376 | transcription start site region 30376 | 1299 bp downstream | ||||||
| Tssr30377 | transcription start site region 30377 | 1273 bp downstream | ||||||
| Tssr30378 | transcription start site region 30378 | 1251 bp downstream | ||||||
| Tssr30379 | transcription start site region 30379 | 1234 bp downstream | ||||||
| Tssr30380 | transcription start site region 30380 | 1155 bp downstream | ||||||
| Tssr30381 | transcription start site region 30381 | 1138 bp downstream | ||||||
| Tssr30382 | transcription start site region 30382 | 1083 bp downstream | ||||||
| Tssr30383 | transcription start site region 30383 | 1072 bp downstream | ||||||
| Tssr30384 | transcription start site region 30384 | 1063 bp downstream | ||||||
| Tssr30385 | transcription start site region 30385 | 1038 bp downstream | ||||||
| Tssr30386 | transcription start site region 30386 | 1016 bp downstream | ||||||
| Tssr30387 | transcription start site region 30387 | 922 bp downstream | ||||||
| Tssr30388 | transcription start site region 30388 | 903 bp downstream | ||||||
| Tssr30389 | transcription start site region 30389 | 881 bp downstream | ||||||
| Tssr30390 | transcription start site region 30390 | 810 bp downstream | ||||||
| Tssr30391 | transcription start site region 30391 | 800 bp downstream | ||||||
| Tssr30392 | transcription start site region 30392 | 782 bp downstream | ||||||
| Tssr30393 | transcription start site region 30393 | 771 bp downstream | ||||||
| Tssr30394 | transcription start site region 30394 | 745 bp downstream | ||||||
| Tssr30395 | transcription start site region 30395 | 718 bp downstream | ||||||
| Tssr30396 | transcription start site region 30396 | 668 bp downstream | ||||||
| Tssr30397 | transcription start site region 30397 | 652 bp downstream | ||||||
| Tssr30398 | transcription start site region 30398 | 574 bp downstream | ||||||
| Tssr30399 | transcription start site region 30399 | 495 bp downstream | ||||||
| Tssr30400 | transcription start site region 30400 | 46 bp downstream | ||||||
| Tssr30401 | transcription start site region 30401 | 25 bp downstream | ||||||
| Tssr30402 | transcription start site region 30402 | 65 bp upstream | ||||||
| Tssr30403 | transcription start site region 30403 | 105 bp upstream | ||||||
| Tssr30404 | transcription start site region 30404 | 1243 bp upstream | ||||||
| Tssr30405 | transcription start site region 30405 | 1354 bp upstream | ||||||
| Tssr30406 | transcription start site region 30406 | 1502 bp upstream | ||||||
| Tssr30407 | transcription start site region 30407 | 1697 bp upstream | ||||||
| Tssr34356 | transcription start site region 34356 | 1411 bp upstream | ||||||
| Tssr34357 | transcription start site region 34357 | 1346 bp upstream | ||||||
| Tssr34358 | transcription start site region 34358 | 1287 bp upstream | ||||||
| Tssr34359 | transcription start site region 34359 | 1212 bp upstream | ||||||
| Tssr34360 | transcription start site region 34360 | 1167 bp upstream | ||||||
| Tssr34361 | transcription start site region 34361 | 1110 bp upstream | ||||||
| Tssr34362 | transcription start site region 34362 | 1097 bp upstream | ||||||
| Tssr34363 | transcription start site region 34363 | 1072 bp upstream | ||||||
| Tssr34364 | transcription start site region 34364 | 1057 bp upstream | ||||||
| Tssr34365 | transcription start site region 34365 | 1031 bp upstream | ||||||
| Tssr34366 | transcription start site region 34366 | 963 bp upstream | ||||||
| Tssr34367 | transcription start site region 34367 | 798 bp upstream | ||||||
| Tssr34368 | transcription start site region 34368 | 768 bp upstream | ||||||
| Tssr34369 | transcription start site region 34369 | 742 bp upstream | ||||||
| Tssr34370 | transcription start site region 34370 | 716 bp upstream | ||||||
| Tssr34371 | transcription start site region 34371 | 573 bp upstream | ||||||
| Tssr34372 | transcription start site region 34372 | 78 bp downstream | ||||||
| Tssr34373 | transcription start site region 34373 | 1246 bp downstream | ||||||
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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