rs227868263 SNP Detail

Summary

• ID
  rs227868263
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67858192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTG TTGTTGGTTT GTTTTTCAGT
  A
  TCTCGGGGAG CCCAAGTTGA TCTTG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323722469	CHEV_11_67780868	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227868263					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67858192 () rs orientation: forward

Symbol	Name	Function Class
Cfap52	cilia and flagella associated protein 52	1715 bp upstream
Cpgi3072	CpG island 3072	1687 bp distal
Cpgi3073	CpG island 3073	773 bp distal
Rr449569	regulatory region 449569	876 bp distal
Rr449570	regulatory region 449570	443 bp distal
Stx8	syntaxin 8	within coordinates
Tssr102288	transcription start site region 102288	869 bp downstream
Tssr108559	transcription start site region 108559	1736 bp upstream
Tssr108560	transcription start site region 108560	1703 bp upstream