rs227870874 SNP Detail

Summary

• ID
  rs227870874
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32876312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTCTAAG CTACTCTGGC
  TACTTCCTAG CCCACATCCC TGAGATGCTC GAATCTTATG GCTTTCTCTG CTCCAGCTGT
  TTTCTTGTGG TCTCTCCTGG ATTCTTTCCC TGTGACTAAT TCTCATTTTT TTCTCTCTCC
  TGCCCCATTT CCTGGAAGGA AGTCCTGCCC TATCCTCTCC CCTGACCAGT TATTCATCAG
  M
  TTTTATTGAC AAATCGGGGA ATAATTCAGG AGCAATGTTT TTACAACATT GAGACAGGAG
  ATAGTTAGAA TACAGACTGC AACCAGATAT GGGGGCATAG AAATCAAGAT TGAATTACAC
  AGCGCACAGT AACATGCCTA CACATTCCAA ATTCTAAGGG GGTAGGTATG GGCAGATAAA
  CGTCCATGTT CCTTTGGTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325362700	CHEV_17_32794283	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227870874					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32876312 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	1562 bp upstream
Gm65897	predicted gene, 65897	90 bp downstream
Rr525786	regulatory region 525786	790 bp proximal
Rr525787	regulatory region 525787	1333 bp proximal
Rr525788	regulatory region 525788	1573 bp proximal
Tssr143725	transcription start site region 143725	1540 bp upstream
Tssr143726	transcription start site region 143726	1628 bp upstream
Tssr143727	transcription start site region 143727	1651 bp upstream
Tssr143728	transcription start site region 143728	1671 bp upstream
Tssr143729	transcription start site region 143729	1683 bp upstream
Tssr143730	transcription start site region 143730	1706 bp upstream
Tssr143731	transcription start site region 143731	1728 bp upstream
Tssr143732	transcription start site region 143732	1742 bp upstream