rs227874638 SNP Detail

Summary

• ID
  rs227874638
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156188419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTG TGATATATAA TAACTGTACT
  K
  TCCTAAAGCC ACCCAGTTCC ACCTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320578821	CHEV_2_156172235	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227874638					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156188419 () rs orientation: forward

Symbol	Name	Function Class
Cnbd2	cyclic nucleotide binding domain containing 2	within coordinates
Gm14253	predicted gene 14253	703 bp downstream
Rr568246	regulatory region 568246	1374 bp distal
Rr568247	regulatory region 568247	1627 bp distal
Tssr27051	transcription start site region 27051	1472 bp downstream
Tssr27052	transcription start site region 27052	1532 bp downstream