rs227878024 SNP Detail

Summary

• ID
  rs227878024
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:84350691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTAAAAGA GTCCCGCAAA
  GCTCAAAGCT TCCATTCTTC AGGGTAACAA TTTCCATGTA TTCATCTCAG AAACTGCAAG
  GATCAAAAAC AAAAAACAAA AAAAACAAAA AAAAAAACAA AACAAAACAA AAAAAAACAA
  AACAAAACAA AAAAACCTCC CAGTGCCTTC AGGAGCCAGA GACCTAAATG GGTTAAGAGA
  K
  CAGTGAGAGT GAGTGGGTGG GAGCCATGGA CTCTAGAGGC GACAGTTTGC TACAAGCTTT
  GTTTCCCCAG CTCCCAGCAT TCCCAGCACT GTGGCCAATT GTTACGTCCC AAGTGGAAAG
  ATTTGAAAGT ACTTCAAACC TTACACCAAC GCCATGAAGT AAGTAGGTGT CGCCGGCTTC
  ACATCCATTT GTTAAGTGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323369354	CHEV_10_83977572	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227878024					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:84350691 () rs orientation: forward

Symbol	Name	Function Class
E230014E18Rik	RIKEN cDNA E230014E18 gene	125 bp upstream
Gm34405	predicted gene, 34405	within coordinates
Rr217061	regulatory region 217061	291 bp distal
Rr217062	regulatory region 217062	310 bp proximal
Rr229121	regulatory region 229121	582 bp proximal
Rr230499	regulatory region 230499	323 bp distal
Tssr94890	transcription start site region 94890	1883 bp upstream