rs227886844 SNP Detail

Summary

• ID
  rs227886844
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5845486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTCCAAA CACACGCAGT
  GCACACTTAC ACACAGTATT GCATACACTC TGGGAATGTT TTTGGGCCTT TAGACCATGT
  ATAACTATTT CCCTAAACTA CATGAAAACT AGTCTTCCAT CCAGTGTTAG GAACAGAGGA
  GCAATGCACA CCACCTCTTT TCGACACCAT CTTTTCCCAA CTTCCTCATA GACAATCCAG
  R
  ATGTTTTCTC AGGGAGGAGA GCCTGAACAG CAGGGAAAGG CCTTGTGTTC CTGAGGTGCA
  AGAGTGGCCA CCTAGGACCC AAGCCCAACT TTAGAGCCAT CTGCATGAAA GAGCCATGCA
  GCCCAAGGAA ACAGGGAAGG CCTCACTAAT CGGAGAAGCT GAGGTAGATC AGACATTTGG
  TCTCTTTAGG CTTAAAATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401662542	MGP_WTSI_19_5795458	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227886844					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401662542	MGP_WTSI_19_5795458	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5845486 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	232 bp downstream
Mascrna	Malat1-associated small cytoplasmic RNA	466 bp downstream
Rr543158	regulatory region 543158	1926 bp distal
Rr543159	regulatory region 543159	1813 bp distal
Rr543160	regulatory region 543160	1040 bp distal
Rr543161	regulatory region 543161	1996 bp proximal
Tssr5415	transcription start site region 5415	1376 bp downstream
Tssr5416	transcription start site region 5416	1852 bp downstream
Tssr157645	transcription start site region 157645	895 bp downstream
Tssr157646	transcription start site region 157646	925 bp downstream
Tssr157647	transcription start site region 157647	1087 bp downstream
Tssr157648	transcription start site region 157648	1253 bp downstream
Tssr157649	transcription start site region 157649	1353 bp downstream
Tssr157650	transcription start site region 157650	1412 bp downstream
Tssr157651	transcription start site region 157651	1466 bp downstream
Tssr157652	transcription start site region 157652	1603 bp downstream
Tssr157653	transcription start site region 157653	1720 bp downstream
Tssr157654	transcription start site region 157654	1763 bp downstream
Tssr157655	transcription start site region 157655	1800 bp downstream
Tssr157656	transcription start site region 157656	1830 bp downstream
Tssr157657	transcription start site region 157657	1952 bp downstream