rs227887041 SNP Detail

Summary

• ID
  rs227887041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:20513636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGACTGA CCTCAGGACT
  GGCCTTGAGT ACCAGGTAGG CGTCTGGCAT AGCCAGTAAC CTGTTTTCTT TCTGGTTGGT
  AGCATTTCTG GGGACCACCA ACTGGCTGAG GCCCAGGGAC AGAGACGTCT GCTCCAGCTA
  AAAGGTTAGT TGTGATGTAC GTGGCCAGTT GGCACTGTGT AAGCTAAGAT GAGCCTCAGC
  Y
  CCACAAGCCA GAGAACTTGG CGAGGTCCCT GGCACTCCCA CTTCCTCAAA GCTATGAGAC
  AGGAGTGTTC TCCTTATGTG ACTAGGCATA AGTTCCAAGT GGGGAGGGGA CTGGCTCAGC
  ATCCGGAGCC AAAACAAGAA TAGAACTGGG AGCTGGGCCT GAAGCAGTTC AGGCTTTGGG
  CTCTCTGCAT CAACACAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395578809	MGP_WTSI_16_20694959	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227887041					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395578809	MGP_WTSI_16_20694959	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:20513636 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8083	CpG island 8083	1130 bp distal
Cpgi8084	CpG island 8084	769 bp proximal
Fam131a	family with sequence similarity 131, member A	within coordinates
Rr325071	regulatory region 325071	435 bp distal
Rr325072	regulatory region 325072	within coordinates
Tssr137487	transcription start site region 137487	1564 bp downstream
Tssr137488	transcription start site region 137488	1539 bp downstream
Tssr137489	transcription start site region 137489	114 bp upstream
Tssr137490	transcription start site region 137490	131 bp upstream
Tssr137491	transcription start site region 137491	155 bp upstream
Tssr137492	transcription start site region 137492	1293 bp upstream