rs227890793 SNP Detail

Summary

• ID
  rs227890793
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:84105809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCGCCCT CGGCCCGCAG
  GAAGGCGCTC GTGCGCGTGC ACCGGCGCCC GGGCTCCCCG CCCGGCCCAG GCCCTGGCCC
  CGGCCCCGGC CGTGCCCCGC CGCCCCGGCC GCGCTCGGGG TTGATTCGTA CCACCTTGCA
  AGGAAGTGAA CGCTTCGCAC GGGAAGGGGA GGCGCCTGCG CCGGCCGCCG GCCGCCTTGC
  Y
  GCTCGGGGAC GCTTGGGCTA CCGCGGCTGC GATCGCCAGG GCGCTGGCCC TTTAGCTTGG
  CGCCCCCCGC CCCCGGTGAA GGAATCGAAT CCCTTCGCAG AGCGTGCGGA GGGTGGGGAT
  ATCCGGGGCC TCTCCCGCGC CCGGAGGAAA GGGGAGGGCG GAGGAAATCC TAGGCCAGTG
  TGAGCCGAGA GGATTCAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401475724	MGP_WTSI_18_84257076	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227890793					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401475724	MGP_WTSI_18_84257076	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:84105809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10336	CpG island 10336	1286 bp distal
Cpgi10337	CpG island 10337	within coordinates
Gm56504	predicted gene, 56504	952 bp upstream
Gm58899	predicted gene, 58899	within coordinates
Ptgr3	prostaglandin reductase 3	441 bp upstream
Rr353212	regulatory region 353212	within coordinates
Rr405764	regulatory region 405764	1095 bp upstream
Tshz1	teashirt zinc finger family member 1	within coordinates
Tssr152202	transcription start site region 152202	within coordinates
Tssr152203	transcription start site region 152203	393 bp upstream
Tssr152204	transcription start site region 152204	502 bp upstream
Tssr152205	transcription start site region 152205	534 bp upstream
Tssr152206	transcription start site region 152206	996 bp upstream
Tssr154120	transcription start site region 154120	1693 bp upstream
Tssr154121	transcription start site region 154121	1415 bp upstream
Tssr154122	transcription start site region 154122	1281 bp upstream
Tssr154123	transcription start site region 154123	1244 bp upstream
Tssr154124	transcription start site region 154124	1193 bp upstream
Tssr154125	transcription start site region 154125	926 bp upstream
Tssr154126	transcription start site region 154126	18 bp downstream