rs227891392 SNP Detail

Summary

• ID
  rs227891392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134072062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACCACCGGG CTAATTTTTT TTTTTTTTTT TAAGGCAATC
  ACTTGGCATG GCTCTGTAGT TAAGAGCACT GGCTGCTCTT CCAGGGGACC TGGCCCTGCT
  Y
  CCCCGCACCT ATGTGAGGGC TCTGTCATCT GTTACTCTAT CTAGCCCCAG GGAGTCGGAT
  GCCCTCTTGT GGCTTCTGTG GGCACCAGGC ATATGGTAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	SPRET/EiJ	ST/bJ
ss363336971	MGP_WTSI_4_133900666	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	T	T	T	T	T	C	C	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	SPRET/EiJ	ST/bJ
rs227891392					SNP	C	T	T	T	T	T	T	T	C	C	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363336971	MGP_WTSI_4_133900666	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134072062 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	963 bp distal
Rr601645	regulatory region 601645	1032 bp distal
Rr601646	regulatory region 601646	56 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	within coordinates
Tssr39548	transcription start site region 39548	1597 bp downstream
Tssr39549	transcription start site region 39549	1540 bp downstream
Tssr39550	transcription start site region 39550	1245 bp downstream
Tssr39551	transcription start site region 39551	1216 bp downstream
Tssr39552	transcription start site region 39552	1143 bp downstream
Tssr39553	transcription start site region 39553	1071 bp downstream
Tssr39554	transcription start site region 39554	1047 bp downstream
Tssr39555	transcription start site region 39555	842 bp downstream
Tssr39556	transcription start site region 39556	727 bp downstream