rs227893872 SNP Detail

Summary

• ID
  rs227893872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70938993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGGATGG AGTCACTGGG
  AGCTGCTTCC CAGGATACCT CTGCTGCAGG CACCCCCAAA GTGCACCCAG CCCTGGAGGA
  CTCACCTGCT TCACATTCTG TCTCTGTGGC ATTGGGCCTA GAGCTCTTGG CCACAAAGCG
  GCAGATGGAG AAAAGCCGAC AGCCACGCTC ACAAGCACTG ATCAGGATAG CCTTGTTATT
  Y
  GGGGACTCTG AGGGACCCTC TGGCTCAGGC TGGGAAGGGA GATAAGAGAC TCAGGCAAAG
  GTACTCGGGG AAGAAGGCTG GGGTCCCCCT AAGAATCCAC GAGACTGAAG TCAGGTTTCA
  GAAAGCCAGG ATCATCATGG GGGGAGGGGT GCCTTCTGAG AAACAGCAAG CAGCTTTCTA
  AGCAGGCTGG ATAGTGGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375101481	MGP_WTSI_8_73010242	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227893872					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375101481	MGP_WTSI_8_73010242	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70938993 () rs orientation: forward

Symbol	Name	Function Class
1700020G03Rik	RIKEN cDNA 1700020G03 gene	1838 bp upstream
Cpgi20459	CpG island 20459	727 bp proximal
Cpgi20460	CpG island 20460	1740 bp proximal
Gm64830	predicted gene, 64830	1049 bp downstream
Gm64831	predicted gene, 64831	1828 bp upstream
Rr186749	regulatory region 186749	7 bp proximal
Tmem59l	transmembrane protein 59-like	within coordinates
Tssr81616	transcription start site region 81616	603 bp upstream
Tssr81617	transcription start site region 81617	871 bp downstream
Tssr81618	transcription start site region 81618	971 bp downstream
Tssr81619	transcription start site region 81619	1772 bp downstream