rs227898307 SNP Detail

Summary

• ID
  rs227898307
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70836674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGTTCTC GCGACCACCC
  ACCCCTGCAA AGGTCTCTAT CACCTTCTTC CTGGGACTTA TGTCACTCAG GGCTGCAACT
  CCCATGCTAA GAGGGAACTC AGTGCGGGAA CCCCTGCTCC CAGTAGTTGT CTGGCAGCTA
  AGAGAGGAAG GGGAAGGCTG TTGTCAATCC CAGGTGAGGA GGAATGGAGG AACGTCAGGA
  M
  CGAGAAAGGA AGGCTGCCGG GCGGAGGAGG AGGCGTGGGG GCAGATCTGG GAGAAAGGGC
  TGGTGACAAG GGAACCTTTG GGGAGAGAAG AGTTACAAAG CTAGCGGAAG CTCTCGAGGC
  ACAGGGAACG TTAAAGAAGC CGAGCGGAGC GCAGGCTCGG GGGACCGAGT CGCAGGTCAG
  GGAGTGGGAC ACAGGAAGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391469006	MGP_WTSI_14_70999041	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227898307					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391469006	MGP_WTSI_14_70999041	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70836674 () rs orientation: forward

Symbol	Name	Function Class
B930095I24Rik	RIKEN cDNA B930095I24Rik gene	181 bp upstream
Cpgi6702	CpG island 6702	within coordinates
Fhip2b	FHF complex subunit HOOK interacting protein 2B	Intron
Rr369865	regulatory region 369865	212 bp upstream
Rr494968	regulatory region 494968	within coordinates
Rr494969	regulatory region 494969	591 bp proximal
Tssr4471	transcription start site region 4471	324 bp downstream
Tssr129613	transcription start site region 129613	567 bp downstream
Tssr129614	transcription start site region 129614	579 bp downstream
Tssr129615	transcription start site region 129615	598 bp downstream