rs227900891 SNP Detail

Summary

• ID
  rs227900891
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44383234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATCTCA TTCAGGGAAG
  GGAAAGGTTT CCTGCAATGG TTTTCATGGC AGTGGGTAGG TAGTCTTGCA CTTTGACTGG
  TCATATCTGT CAGTCTCTGG GAAGAGCAAT GTAGACTAAA CGATGGTCTC AGGAACATAT
  ATAGTTCTTT GGGAGTCTGT ATGAATACCT CTGCTGAGGA TCCCCAAATA CTTGGTTTTT
  W
  AAAAAAGCTC TAATCACCTC AGAACTGCCC TTGAAGTAGT AGGTCAGTAT TAATAACCCT
  TTTTTGTCAG CACTCTCCCA GAGTGTCCTC CTGAGCTGAT GCTATGGACA CTTAATTCAC
  ACTGTTGAGA TGTGAGACTG TCAGATACTT AGCCCAGGAG TTTCTTGGGT TGATTAAAGG
  CTTTATCTCT GGGGTGGGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402552069	MGP_WTSI_19_44469285	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227900891					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402552069	MGP_WTSI_19_44469285	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44383234 () rs orientation: forward

Symbol	Name	Function Class
Rr548236	regulatory region 548236	327 bp distal
Rr548237	regulatory region 548237	within coordinates
Scd1	stearoyl-Coenzyme A desaturase 1	within coordinates
Tssr5524	transcription start site region 5524	1564 bp downstream
Tssr156606	transcription start site region 156606	1613 bp upstream
Tssr156607	transcription start site region 156607	1937 bp upstream
Tssr159446	transcription start site region 159446	202 bp upstream
Tssr159447	transcription start site region 159447	27 bp upstream
Tssr159448	transcription start site region 159448	1 bp upstream
Tssr159449	transcription start site region 159449	48 bp downstream
Tssr159450	transcription start site region 159450	75 bp downstream
Tssr159451	transcription start site region 159451	147 bp downstream
Tssr159452	transcription start site region 159452	437 bp downstream
Tssr159453	transcription start site region 159453	496 bp downstream
Tssr159454	transcription start site region 159454	528 bp downstream
Tssr159455	transcription start site region 159455	821 bp downstream
Tssr159456	transcription start site region 159456	943 bp downstream
Tssr159457	transcription start site region 159457	987 bp downstream
Tssr159458	transcription start site region 159458	1017 bp downstream
Tssr159459	transcription start site region 159459	1107 bp downstream
Tssr159460	transcription start site region 159460	1144 bp downstream
Tssr159461	transcription start site region 159461	1203 bp downstream
Tssr159462	transcription start site region 159462	1231 bp downstream
Tssr159463	transcription start site region 159463	1277 bp downstream
Tssr159464	transcription start site region 159464	1300 bp downstream
Tssr159465	transcription start site region 159465	1324 bp downstream
Tssr159466	transcription start site region 159466	1345 bp downstream
Tssr159467	transcription start site region 159467	1398 bp downstream
Tssr159468	transcription start site region 159468	1646 bp downstream
Tssr159469	transcription start site region 159469	1716 bp downstream
Tssr159470	transcription start site region 159470	1733 bp downstream
Tssr159471	transcription start site region 159471	1750 bp downstream
Tssr159472	transcription start site region 159472	1786 bp downstream
Tssr159473	transcription start site region 159473	1805 bp downstream
Tssr159474	transcription start site region 159474	1830 bp downstream
Tssr159475	transcription start site region 159475	1875 bp downstream
Tssr159476	transcription start site region 159476	1893 bp downstream
Tssr159477	transcription start site region 159477	1913 bp downstream
Tssr159478	transcription start site region 159478	1923 bp downstream
Tssr159479	transcription start site region 159479	1947 bp downstream
Tssr159480	transcription start site region 159480	1975 bp downstream