rs227903523 SNP Detail

Summary

• ID
  rs227903523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70214716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCGCCCTT CCCAGGAGAG CTGAGACAGC CCTGGTTGTC
  CTGGAACTCA CTCTGTAGAC CAGGCTGGTC TTGAACTCAG AGAGATCCAT CTGCCTCTGC
  Y
  TCTGCCTCTG CCTCTGCCTC TGCCTCTGCC TCTGCCTCTG CCTCTGCCTC TGCCTCTGCC
  TCTGCCTCTG CCTCTGCCTC TGCCTCTGCC TCTGCCTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323735038	CHEV_11_70137392	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227903523					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70214716 () rs orientation: forward

Symbol	Name	Function Class
Alox12e	arachidonate lipoxygenase, epidermal	1262 bp upstream
Cpgi3180	CpG island 3180	1467 bp distal
Tssr108941	transcription start site region 108941	1414 bp upstream
Tssr108942	transcription start site region 108942	1376 bp upstream
Tssr108943	transcription start site region 108943	1353 bp upstream