rs227904430 SNP Detail

Summary

• ID
  rs227904430
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:112426539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAT AGAGTCTTCT CCAATTCTTG
  T
  TCAGAGAGGG GGTAAAGAGG GAGAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324528925	CHEV_13_113080213	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227904430					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112426539 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ankrd55	ankyrin repeat domain 55			Intron
				Noncoding-Transcript-Variant
Gm55074	predicted gene, 55074			1116 bp upstream
Rr486330	regulatory region 486330			1175 bp distal
Rr486331	regulatory region 486331			373 bp distal
Tssr121099	transcription start site region 121099			1498 bp downstream
Tssr121100	transcription start site region 121100			1457 bp downstream
Tssr121101	transcription start site region 121101			1411 bp downstream
Tssr121102	transcription start site region 121102			1199 bp downstream
Tssr124046	transcription start site region 124046			853 bp upstream