rs227910341 SNP Detail

Summary

• ID
  rs227910341
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48715950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAAACCC AGAGAAGATG
  TGGCAAAGAG TGAAAAGATC CTAAATTCGT TTTGAGAATT ATCTAGGAGT CCCTCTGCTT
  ACATTTTCTT TTTTTCTTTT GGGCTTATTA GAAGTGTGTC TCTCCATCCC CTTATCCCGG
  GCTCTGGACT GCCAGGATAT TCACAGCTCT CCCTCCAGCT GACCTATTTA GCTCACACTG
  K
  AACTTTGGGA CCTCAAGATC CCATCACTCA CCCAGTTAAC TAATATAAGG CAGTTTTCAG
  TGATCTTCCA TGTGGAGACA GGAACTAAGT TGATAGATAG GAAATAAACA TAGCTAACAC
  CATCAATCCC CTGGGATGCC CAACAGCACT CACAGGTAGC TGTCACTTTT GAGTCATTTG
  TCTTTTAAAT GACAATACCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323664659	CHEV_11_48638625	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227910341					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48715950 () rs orientation: forward

Symbol	Name	Function Class
Cdk2ap1rt	cyclin dependent kinase 2 associated protein 1 retrotransposed	223 bp downstream
Cpgi2781	CpG island 2781	384 bp distal
Cpgi2782	CpG island 2782	932 bp proximal
Gm74096	predicted gene, 74096	within coordinates
n-TGacc1	nuclear encoded tRNA glycine 1 (anticodon ACC)	1322 bp downstream
Rr446122	regulatory region 446122	247 bp distal
Rr446123	regulatory region 446123	532 bp proximal
Rr446124	regulatory region 446124	1522 bp proximal
Trim7	tripartite motif-containing 7	1015 bp upstream
Tssr107641	transcription start site region 107641	1178 bp downstream
Tssr107642	transcription start site region 107642	1601 bp downstream