rs227911049 SNP Detail

Summary

• ID
  rs227911049
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162399204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCACGGAA TAGAGAACGT
  ACTACAGAAG ATGCATACGA GAGATTTGAG CAAGCGGGGA AGTACACGTA AGAGTCGTGC
  GATGTTGACA CTTCAGTGAA CCGTGTGGTG TTCCATCCAC GACGTGGAAA GACATCACGA
  TGACTCTTAC TACGTAGACA CGTTAACGAC AAGAATATTT TTGGTAGGAG GAACTGTAGG
  M
  AGAATGGAGT CAACTCTGAT TTCTGAGTAC AGTTTATTTA CGCTACTTAT TTTTAATCTG
  TAAATATCAT TAGTTGCGGG TAGTTCCAGG GTAGCTCGTT TATCTATCTG CTGATTTGCT
  GGTGGTTTGT TTATTTGTCT AGCCTGAGTT TGCTTCCTTC CTCAAACTGA TAGCTTGGAT
  TTTAGAACTT GAATAAGAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352172906	MGP_WTSI_1_164501766	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227911049					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352172906	MGP_WTSI_1_164501766	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162399204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi932	CpG island 932	22 bp distal
Rr396472	regulatory region 396472	930 bp downstream
Rr396473	regulatory region 396473	193 bp downstream
Rr421988	regulatory region 421988	399 bp distal
Rr421989	regulatory region 421989	1088 bp distal
Rr421990	regulatory region 421990	1020 bp distal
Rr421991	regulatory region 421991	within coordinates
Tssr9715	transcription start site region 9715	979 bp downstream
Tssr9716	transcription start site region 9716	963 bp downstream
Tssr9717	transcription start site region 9717	880 bp downstream
Tssr9718	transcription start site region 9718	within coordinates
Tssr14622	transcription start site region 14622	1313 bp upstream
Tssr14623	transcription start site region 14623	270 bp upstream
Tssr14624	transcription start site region 14624	260 bp upstream
Tssr14625	transcription start site region 14625	227 bp upstream
Tssr14626	transcription start site region 14626	193 bp upstream
Tssr14627	transcription start site region 14627	148 bp upstream
Tssr14628	transcription start site region 14628	130 bp upstream
Tssr14629	transcription start site region 14629	95 bp upstream
Vamp4	vesicle-associated membrane protein 4	within coordinates