rs227912315 SNP Detail

Summary

• ID
  rs227912315
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:20413505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGATCTC ATGCCCTCTA TTACTCTAAT CCACTGTAAA
  AGTGCACTCA GAACTGAGCA TCCTTAACAG TTATTCTATT TTTCTCCAGT AAGAGAAATG
  CCAAGATTTC AGGCTGTGGA CTGTGTTCCA GTGGCAAGCA GCAGAGATCC ATGTTTAGCT
  W
  GTGTGGGTAT TTTTTTTTAT TAAAAATGTT TGTAAATTTG TTTTGTGTAT ATGGGTGGTT
  TGTACAGAGA CAATGGTAGA GAAAGACTAA ATAGGGGGAG TTTACGCAGC AGAGACATAA
  ACAAGTGAAA TTTGTGAATT TTACTTTCAG GTTTCCTTGT GATTCAAGGG CCCATGGCAT
  GTCTCTGGAT AAGCAGATTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325739977	CHEV_19_20510631	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227912315					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:20413505 () rs orientation: forward

Symbol	Name	Function Class
D19Mit23	DNA segment, Chr 19, Massachusetts Institute of Technology 23	52 bp distal
Gm32689	predicted gene, 32689	886 bp upstream
Gm41816	predicted gene, 41816	1613 bp upstream
Rr356916	regulatory region 356916	1105 bp distal
Rr356917	regulatory region 356917	896 bp proximal
Rr361508	regulatory region 361508	909 bp proximal
Rr364130	regulatory region 364130	1235 bp distal