rs227915584 SNP Detail

Summary

• ID
  rs227915584
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:55794740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACGTCGT GCGCGGCGGG
  ACCCTCTACT ACCAGCGGCG GCAGCGGCAC CGCAAGACCT TCGCCGAGCT GGAGGTGGTG
  TTGCAGCCGG AGCGTCGCCA GGGCCTCATC GAGGCGGCCC ATTTGGGCCC CGGGGGCACC
  CACCACACCC GGCACCAGAC CTGGCACGAC CTGTCCAAGA CCTACTGGTG GCGAGGTGAG
  Y
  GCGCCGGGCC CCGGGGGCCG AGGGGGGCGG CTCGGCCCGG CCTGCGTGCG CACCCGCGAG
  CCCTCAAGTC TGGGGACCGG GCCGTATCCT TAGCCCGGAG GCGTGCGTGC GTCCGTTCGG
  CTGCGCGGCA ACCGCGGGAC CCAGCCGAGC CAAGCGGAGC AGAGCGGGCT GGGGACGCGA
  AAGCAGCCGC ACTTCCCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325189951	CHEV_16_55974490	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227915584					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:55794740 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8325	CpG island 8325	within coordinates
Gm28037	predicted gene, 28037	within coordinates
Rr404882	regulatory region 404882	516 bp downstream
Tssr138799	transcription start site region 138799	577 bp downstream
Tssr138800	transcription start site region 138800	547 bp downstream
Tssr138801	transcription start site region 138801	513 bp downstream
Tssr138802	transcription start site region 138802	485 bp downstream
Tssr138803	transcription start site region 138803	795 bp upstream
Tssr141546	transcription start site region 141546	136 bp downstream
Tssr141547	transcription start site region 141547	164 bp downstream
Zbtb11	zinc finger and BTB domain containing 11	within coordinates
Zbtb11os1	zinc finger and BTB domain containing 11, opposite strand 1	within coordinates