rs227916547 SNP Detail

Summary

• ID
  rs227916547
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51370577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTAGAG TATTAGTATA
  GTCATAGGAA GGAATTTAAC AGTCCCTTTC TTCCTCTTAA AGTTTCTATT GTTGGAGCTT
  TCCCATCCTC CTAGCAGATG CTTTTTCAAT TCATGCAGCT CAAAGAGAGG CCAACTTACA
  AGTGCTTTCA ACAGCACCAG ACCCAACACA CAGAGATAGA CACCACCAGG AGAAATAATT
  C
  TTGCCATAGA CCTTACTTCC ACCTGATTGT CCCTGTCTTC ACAGCTCTAG CCTAGAGGCT
  ACCATCAATG AAAAACACCT GTGTGAGAAT AAGAGGGCCC TGGGGACTAT ATGCACTAAA
  CTTCAGTATC AGAGGTCTGA TGGGGAGTGT GGTGGGTCAG CTCGTGGAGG AAAAGAACCC
  TTACAATGGA TCTGGAGATG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380379860	MGP_WTSI_10_51214287	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227916547					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380379860	MGP_WTSI_10_51214287	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51370577 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93270	transcription start site region 93270	1740 bp downstream
Tssr93271	transcription start site region 93271	1622 bp downstream
Tssr93272	transcription start site region 93272	1567 bp downstream
Tssr93273	transcription start site region 93273	1296 bp downstream
Tssr93274	transcription start site region 93274	763 bp downstream
Tssr93275	transcription start site region 93275	630 bp downstream
Tssr93276	transcription start site region 93276	576 bp downstream
Tssr93277	transcription start site region 93277	528 bp downstream
Tssr93278	transcription start site region 93278	492 bp downstream
Tssr93279	transcription start site region 93279	336 bp downstream
Tssr93280	transcription start site region 93280	100 bp upstream
Tssr93281	transcription start site region 93281	140 bp upstream
Tssr93282	transcription start site region 93282	164 bp upstream
Tssr93283	transcription start site region 93283	241 bp upstream
Tssr93284	transcription start site region 93284	575 bp upstream
Tssr93285	transcription start site region 93285	800 bp upstream
Tssr93286	transcription start site region 93286	914 bp upstream
Tssr93287	transcription start site region 93287	1276 bp upstream
Tssr93288	transcription start site region 93288	1536 bp upstream
Tssr93289	transcription start site region 93289	1604 bp upstream
Tssr97556	transcription start site region 97556	within coordinates
Tssr97557	transcription start site region 97557	353 bp downstream
Tssr97558	transcription start site region 97558	1540 bp downstream