rs227918866 SNP Detail

Summary

• ID
  rs227918866
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:33878108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCAGGACT GGATTCTAGC
  CAGTCTGCAG GGAGGGGTCC TTGGCCAGAG CAGGAGTAAC AGTAGGCAGA GCTGCCCAGC
  TCTAGGGTGG ACACACAGGG ATGAGAGCAT GAGGGTTCTG GGGCCAGGGC TTTCCCTGCT
  CAGCTATCTG GGAAAGATAA GGGTGATGAG TAAGCCAGTG AAAGGTGTTC GTAACCCACG
  M
  GCCATTCCCC CCCCCACCCC CCCCATGAGC AGTTTTAAGT TCTTCAAGCC ACATACAGCC
  AGACTGGGCA GAAGCACTGA GCCAGGTCCC CATGTATCTG GCTCCCATAG GCTTCATCAG
  ACCTTGTGGA ACTTGTCTGA AAGTGAGACA AGGTTCCCTG CCTTGTGAGG GTAGAGAGGC
  CATCAGTCAC AGGGTGGTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364486317	MGP_WTSI_5_34063413	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227918866					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364486317	MGP_WTSI_5_34063413	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33878108 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15741	CpG island 15741	676 bp proximal
Fgfr3	fibroblast growth factor receptor 3	960 bp upstream
G630022F23Rik	RIKEN cDNA G630022F23 gene	within coordinates
Rr366768	regulatory region 366768	466 bp upstream
Rr407322	regulatory region 407322	within coordinates
Rr609611	regulatory region 609611	470 bp proximal
Rr609612	regulatory region 609612	1052 bp proximal
Rr609613	regulatory region 609613	1553 bp proximal
Tssr45829	transcription start site region 45829	58 bp upstream
Tssr45830	transcription start site region 45830	1005 bp upstream