rs227919903 SNP Detail

Summary

• ID
  rs227919903
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153063116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATATTGTCA AAGGGTGTGA GAACTCCCAT
  TTCTAAGTGT GATAGTGACC AGTGTAGGCT GACCAGGAGA GATGTGGCTG GCTTTGTACA
  GAACATGGAG TCTGAACTAG ATACCTAGTT CTAACCAGGA AGTAGACAAA GCATTGAAGA
  R
  CAACAGAGGC AAGATAGGGT ACTGCAGACA AGCCGACATC TCTAAAATCT AGCGCAAAAT
  GAGCAACAGA ATGGATATTC TAATTTTCTT AACCTAGACT CAACTCTCTT CTGCTCTGTC
  CAAATAATGT GGAGATTCTT CTCACTCAGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320071245	CHEV_1_155034500	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227919903					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153063116 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	903 bp distal
Lamc2	laminin, gamma 2	923 bp upstream
Rr13130	regulatory region 13130	within coordinates
Rr25076	regulatory region 25076	876 bp proximal
Rr28719	regulatory region 28719	715 bp distal
Tssr14250	transcription start site region 14250	1314 bp upstream
Tssr14251	transcription start site region 14251	1278 bp upstream
Tssr14252	transcription start site region 14252	1248 bp upstream
Tssr14253	transcription start site region 14253	1234 bp upstream
Tssr14254	transcription start site region 14254	1215 bp upstream