rs227926953 SNP Detail

Summary

• ID
  rs227926953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69815877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCCAAGCC ACTGTGCTTC CCTAATCAGA
  CACAAAGTAT CTCCTGTCCT TGTCCACTGC TTCTGGAGAG GCTGAGATAA CTTCAGTGCA
  GAGACCTGAA CCACAGAAGC CAAGGTTCTT TCATGGTACT ATACCACGTG TGCTTTCTTC
  R
  TTAGAATGAC TATGACTTAT TTTACAACTG TTCTGGAAAT GTCTCAGCTT TCAGCAGCAG
  AGACATGTCT GCCACTACTT TTGTTCACTT GTTTGTTTGT TTTTGAGACA GAGTTTATGG
  CTCAGTATGG CTTCATTCTG TCAGTTCTCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085531	CHEV_12_70870090	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227926953					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69815877 () rs orientation: forward

Symbol	Name	Function Class
Cdkl1	cyclin dependent kinase like 1	within coordinates
Rr467133	regulatory region 467133	1312 bp distal
Tssr116524	transcription start site region 116524	1811 bp upstream
Tssr116525	transcription start site region 116525	200 bp downstream
Tssr116526	transcription start site region 116526	630 bp downstream