rs227929777 SNP Detail

Summary

• ID
  rs227929777
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72307341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGGTCAGA TGCAATTTTG GGGCCCAGCG
  ATGCAAGTCG TGTGCCGCGA CCGTTTAGTA ACCTTCCCTG CGTCCCCCAA CTCCCCACCC
  GTCCCACCCT TTTCTTCCCG GCTTGCAGCT GCGAGCTGGA ACGTAACTCT TTTTGCTCCA
  G
  CGGAAGCCAG AACTTATGTC CTGCCCTGGA GTGGGTTGAA GAGTGGGGGG ATGGGCGGAA
  AGGAAGACAG TGACGTGCTT CAAATAAATA TCGGGTTCGG GGGCCCTTGT GGCGAGGTCT
  GAGTGGGTAG ACGGAGTCGT GGTCTCATAG                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342600	CHEV_2_72315054	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227929777					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72307341 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	within coordinates
Cpgi11756	CpG island 11756	within coordinates
Rr397036	regulatory region 397036	931 bp downstream
Tssr18351	transcription start site region 18351	997 bp downstream
Tssr18352	transcription start site region 18352	785 bp downstream
Tssr18353	transcription start site region 18353	773 bp downstream
Tssr18354	transcription start site region 18354	738 bp downstream