rs227932558 SNP Detail

Summary

• ID
  rs227932558
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47015282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTAGCAT GCTAGTCTGC
  ATGTGCTCCA AAGCTCCCTT CCAGCACAGA CGTTCTGGGG TTCCATCAAC AGAAGAAGGG
  CTCGGTCCTG GCTTACAAGT TTGTGTGTAA AGGAAGACTC GAGGGAGGGG CCTAGGCCAG
  ATTTGGGCGG AGGAGAGAGA AAGCAGAGCG GTTCTAGGTC AGGGGCTTGT CGTGGGGGGG
  C
  GGGGGGGGGG AAGGAGGGAC TGTACAGAAC TGTGGAGAGG CCGTCTTTTA AGCTGGTGAG
  GAGAAGAGGG AAGGGGCTGC TCAGGGCGGG GGTGGGGGAA GTACTGGAGG GAAATGCGGT
  CTTAAATGAG CACTGTCCCA AACCGTGGGG GATCGGGGAC AGATAAAGGC GGGGAGAAAA
  AGCAAGGGAG TGAGCCGGGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	SWR/J
ss398326763	MGP_WTSI_17_46841305	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	SWR/J
rs227932558					SNP	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398326763	MGP_WTSI_17_46841305	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47015282 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9240	CpG island 9240	202 bp proximal
Gm65134	predicted gene, 65134	831 bp upstream
Ppp2r5d	protein phosphatase 2, regulatory subunit B', delta	within coordinates
Rr370260	regulatory region 370260	589 bp upstream
Tssr148375	transcription start site region 148375	546 bp downstream
Tssr148376	transcription start site region 148376	646 bp downstream