rs227935561 SNP Detail

Summary

• ID
  rs227935561
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:4025657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCGGAAG CCGACCATGC
  CCCGAGCTGA GCCAATAGGA CATCGACTCT CTCCGCGGGT GCAGGGAGAT TGCAGCCGCA
  GCAGCTGGCT GGAAGAGGGC GGTTTGGAAG GTCTGGAAAG AGGATTTGCA GCGGTTGGCG
  CTGTAGTGAA GGAGGTGGAC TAAAATAAAA CTTGATTGTA ATGGTGGGGG CGGGGGGTGG
  K
  GGGGGAAGGT CAGAAACGGA AGTCTGCGGA CGGGTGAGAT TCATCCAAGC TGCGAGACCT
  AGTGTGAGGG CAGACAACTT GGCAGTCCTC AGCCTGCTAG CTGGCATAAC GCTTTCCCCG
  AATCTTCACC CTGGAGCTTG TTTTTACTCC GGATTGATCT TGGCTAGCTC ACACTTAAAG
  TACCTTAAAT GTCTTGCGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	KK/HlJ	LG/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss392869933	MGP_WTSI_15_3946175	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G	G	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	KK/HlJ	LG/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs227935561					SNP	T	T	T	T	T	T	T	T	T	T	T	G	G	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392869933	MGP_WTSI_15_3946175	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:4025657 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6911	CpG island 6911	within coordinates
Gm2093	predicted gene 2093	within coordinates
Rimoc1	RAB7A interacting MON1-CCZ1 complex subunit 1	431 bp upstream
Rr369897	regulatory region 369897	within coordinates
Rr498628	regulatory region 498628	442 bp distal
Rr498629	regulatory region 498629	128 bp distal
Rr498630	regulatory region 498630	within coordinates
Tssr133595	transcription start site region 133595	930 bp upstream
Tssr133596	transcription start site region 133596	415 bp upstream