rs227939209 SNP Detail

Summary

• ID
  rs227939209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91760509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAGGCGT GATTGACAGA
  GCTGACAGGA AGACAAAAGG CACTGGTGGG TTATATCTTG GGCCTGTGGG AGAGGAGGGC
  TCCGTTCAGG CTCCAGGCGA GGCCGGAGGC TCTCTGGCCT CCTGACTTAG TCCTTTCCTT
  TTCCTTTCTT GGCTGGAAAA CAATAACGGA GATGCATTAG TGCGGTGGGT GACCTAGCTC
  R
  GACTCACCAG ACAACGCAGA CATGTCCATC AAGGAGAGAA AATCCTGCCC CCTAGTGGTG
  ACTGACCAGT TCACCTGGAA GTGGTGGGAA AGGGCAGCCA TGTGATATGA AACCTTTCTT
  TATTCGTTCA ACTTTTTAAC CCTCGCGCCC CCCCCCCCCC TTTAAAGACA GACTCTCAAG
  TCTCTCAGTC TGTAACCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354821161	MGP_WTSI_2_91770321	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227939209					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354821161	MGP_WTSI_2_91770321	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91760509 () rs orientation: forward

Symbol	Name	Function Class
Chrm4	cholinergic receptor, muscarinic 4	1476 bp downstream
Cpgi11915	CpG island 11915	1401 bp distal
Cpgi11916	CpG island 11916	890 bp proximal
D2Mit1007	DNA segment, Chr 2, Massachusetts Institute of Technology 1007	1705 bp proximal
D2Mit1008	DNA segment, Chr 2, Massachusetts Institute of Technology 1008	1800 bp proximal
Gm39876	predicted gene, 39876	1386 bp upstream
Gm75422	predicted gene, 75422	within coordinates
Mdk	midkine	within coordinates
Rr560807	regulatory region 560807	1735 bp distal
Rr560808	regulatory region 560808	760 bp distal
Rr560809	regulatory region 560809	42 bp proximal
Rr560810	regulatory region 560810	1514 bp proximal
Tssr18929	transcription start site region 18929	488 bp downstream
Tssr25211	transcription start site region 25211	274 bp upstream
Tssr25212	transcription start site region 25212	260 bp upstream
Tssr25213	transcription start site region 25213	755 bp downstream
Tssr25214	transcription start site region 25214	1287 bp downstream
Tssr25215	transcription start site region 25215	1497 bp downstream
Tssr25216	transcription start site region 25216	1511 bp downstream
Tssr25217	transcription start site region 25217	1532 bp downstream
Tssr25218	transcription start site region 25218	1564 bp downstream
Tssr25219	transcription start site region 25219	1610 bp downstream
Tssr25220	transcription start site region 25220	1791 bp downstream
Tssr25221	transcription start site region 25221	1830 bp downstream