rs227941170 SNP Detail

Summary

• ID
  rs227941170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154722377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCACCTC TGCACCTCCG
  GGGTGGGCCC GTGCGCTGCG CTCCGGTCTC CGCGCCCCGT TGGGCTGCAG CCGCGGCCCC
  CAGGTGAGTA CCGGGTGCGG AAGCGCCGGA GCTAGCCCCT TTCAGGAGCT GGGGTCCTTT
  CGGGACACTC CCCTCCGGCT CCTCCCGGGC CAGGTGCCGC TCGGGTTGGA GAACCCGAGG
  Y
  ACAGGTGGAG GAGTGCGAGC AGGAAACTAG CCGACGCTCT CTCCCTGAAG CCTTCACATT
  CGGAGCTCAG GCCGACGAGG GGCCTGGCTG GGCAAGAGCA GGGTGGCCCC AACTAAGAGG
  CCTAATGGGA TGAGTGTGGA TTCCTCCTGC GAGTACGGCT ACGATTTGAG TTTGAATTGG
  AAACAAACGG AGGCGCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363773552	MGP_WTSI_4_154012029	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	C	C	C	T	C	C	C	T	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227941170					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	C	C	C	T	C	C	C	T	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363773552	MGP_WTSI_4_154012029	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154722377 () rs orientation: forward

Symbol	Name	Function Class
5930403L14Rik	RIKEN cDNA 5930403L14 gene	1553 bp upstream
Cpgi15444	CpG island 15444	within coordinates
Gm57100	predicted gene, 57100	497 bp downstream
Prdm16	PR domain containing 16	1047 bp upstream
Prdm16os	Prdm16 opposite strand transcript	within coordinates
Rr100673	regulatory region 100673	within coordinates
Tssr1394	transcription start site region 1394	986 bp downstream
Tssr40591	transcription start site region 40591	772 bp downstream
Tssr40592	transcription start site region 40592	356 bp downstream
Tssr40593	transcription start site region 40593	333 bp downstream
Tssr44877	transcription start site region 44877	1785 bp upstream
Tssr44878	transcription start site region 44878	1705 bp upstream
Tssr44879	transcription start site region 44879	1682 bp upstream
Tssr44880	transcription start site region 44880	1563 bp upstream
Tssr44881	transcription start site region 44881	1140 bp upstream
Tssr44882	transcription start site region 44882	1098 bp upstream
Tssr44883	transcription start site region 44883	1067 bp upstream
Tssr44884	transcription start site region 44884	934 bp upstream