rs227941712 SNP Detail

Summary

• ID
  rs227941712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19054471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGACTTC TCTTCTTGTA
  TGTAGCTATC AGACTTAGTC AAACTGTATT AGATGCAGAG TTCACGGACC CTACTGATAT
  TTGTCATGAG TGCACATCCT GTTTCTGTGT TCAGAACACA AAGCTTTTAG GTTGTAGCTT
  TCAAAGTAGC AAAATGTTCT TTTTACATCC CCTTCTGGTC CACCCCCTCC CCCACCCCCC
  Y
  CCCCCATCAG TACTCCTATT AGTCTCTATT TCTGTAAATC CTGCCACCTC AGAGTCATCT
  TCTTACTGTT TCCAGAAAAA CAAAACAAAA CAAAAACAGT CCAAAACTAT CAAAGAGAAG
  AGTATTGAGA GACCAGATGA ACTCTATCTT GGGTTCAGGC TCCATCTAAA AGAACCTGAT
  CTAAGGTCAA ACTCGAGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss353264608	MGP_WTSI_2_18971287	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs227941712					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353264608	MGP_WTSI_2_18971287	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19054471 () rs orientation: forward

Symbol	Name	Function Class
Gm75706	predicted gene, 75706	594 bp upstream
Rr63907	regulatory region 63907	1099 bp distal
Tssr16405	transcription start site region 16405	388 bp upstream
Tssr22816	transcription start site region 22816	1279 bp upstream