rs227943308 SNP Detail

Summary

• ID
  rs227943308
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135150752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTCAAAA ATCCAAACAA
  ACGAAGCTGG AGAGATGGCT CAGCGGTTAA GCTTCTAGAG GTCCTGAGTT CAATTCCCAG
  CAACCACATG GTGGCTCACA ACCATCTGTA ATGGGGGTCT GATGCCCTCT TTTGGTGTGT
  CTGAAAGACA ACATATTCAC ATTCATAAAA TAATAAATCT TAAAAAAAAT AAACAAACAA
  R
  CAAAGCAAAT AAATAAAATG CTTAATTTGA GGCTAATAGT TTCAGAAGAT TAGACTCTAG
  GGTGAGGGTG GGAGTGGGGG TGGGGATGGG AGTGGGGGTG GGGGTGGGGA TGGGAGTGGG
  GGTAGGGTGA GGGTGGGGGC AAAGCCATGG TAGCAGCTAG AGCTAAAAGC TAGCATCTTG
  ATCCAAAATC CAGAGGCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss351536291	MGP_WTSI_1_137119591	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	G	G	G	A	A	A	A	G	G	G	G	G	G	G	A	A	G	A	A	A	A	G	A	G	A	G	A	A	A	A	G	A	A	A	G	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs227943308					SNP	A	A	A	A	A	G	G	G	A	A	A	A	G	G	G	G	G	G	G	A	A	G	A	A	A	A	G	A	G	A	G	A	A	A	A	G	A	A	A	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351536291	MGP_WTSI_1_137119591	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135150752 () rs orientation: forward

Symbol	Name	Function Class
Rr419105	regulatory region 419105	1216 bp proximal
Rr419106	regulatory region 419106	1995 bp proximal