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rs227943699 SNP Detail
Summary
  • ID
    rs227943699
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:28854364 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACCTTCTCAG GGGCTCTAGT
    TTCCCTCAAC CCTGTGAACC TGGGTCTCAG AAGTGTTAAC GACTTTTGCC AACTTGACAA
    TTGCTATTGG ATATAGGCGT GCCCAGCCCA CTCTGGGCCT GGGCTGTATA AGAGGTAGCT
    GAACAAGCCG GGAGGCATGT GCTAGTAAAC GGTTGTCCTC CATGGCTGGC TTGAGGCTTG
    R
    GTTCCTGCCT CAGTTTCCTT CAACGGTGGG CTGTAACTTG TGAAGGGAAA CAAACGGTTT
    CCTCCCCTAA GCTGGCTTTG GTCAGTGTTT TATCACAGCA AAAAGCAAAT TAGAACGAAT
    GGCCACTGTC GATGGGTCAT CCTTTTTAGA GCTGGTTTTG AAAACAGGCT CCTTTCCACA
    AGTAAGGTAC CTCAGGAGGA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370876344 MGP_WTSI_7_29939958 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227943699 SNP G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss370876344 MGP_WTSI_7_29939958 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:28854364 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
1110035H17Rik RIKEN cDNA 1110035H17 gene 741 bp upstream
Cpgi18740 CpG island 18740 360 bp proximal
Fam98c family with sequence similarity 98, member C within coordinates
Gm73440 predicted gene, 73440 1514 bp downstream
Rasgrp4 RAS guanyl releasing protein 4 978 bp downstream
Rr400219 regulatory region 400219 1173 bp upstream
Rr644490 regulatory region 644490 711 bp distal
Rr644491 regulatory region 644491 251 bp proximal
Rr644492 regulatory region 644492 763 bp proximal
Rr644493 regulatory region 644493 1234 bp proximal
Rr644494 regulatory region 644494 1257 bp proximal
Rr644495 regulatory region 644495 1382 bp proximal
Tssr65599 transcription start site region 65599 704 bp upstream
Tssr65600 transcription start site region 65600 732 bp upstream
Tssr65601 transcription start site region 65601 805 bp upstream
Tssr71610 transcription start site region 71610 658 bp downstream
Tssr71611 transcription start site region 71611 683 bp downstream
Tssr71612 transcription start site region 71612 778 bp downstream
Tssr71613 transcription start site region 71613 997 bp downstream
Tssr71614 transcription start site region 71614 1024 bp downstream
Tssr71615 transcription start site region 71615 1233 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory