rs227944079 SNP Detail

Summary

• ID
  rs227944079
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132644885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGATTTT TATTTTAAAA
  AAAGTTGCTT CAGGGCTGGC AAGATGGCTC AGGGGATGAA AATTCTTGCT GCACAAGACT
  GACTGTTCCA CACTGTGTCC TTTTTTCTAG CCTTGAGCAG GCTAAATGGA CCTTAAGTGT
  TTGTCAGTTT GTCTTTCACA GACCTAGGTA GTCTTTCGCC TTGTCACACC TGTAATTTCT
  A
  ACAGAAGTAG ACTATCTGTT GAACTTGTTT TGTAACATAA TCTAGCTAAA ACAAAGGACG
  GGTCTATGGG CTCTGTATAA ATACAGTGTA AATATTAAAG TTTGAGCCTT GGTCAGAAAC
  TTTTGTCTTG GCTTAATTCT TCTCCCCACC AGCCCTTTCC AGCTTCCCTT TCAGGTACCC
  AGTTCATGCA TGGTTGCTGG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320509750	CHEV_2_132628701	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227944079					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132644885 () rs orientation: forward

Symbol	Name	Function Class
Trmt6	tRNA methyltransferase 6	1242 bp downstream